nature-review recommended genetics websites  dog genetics

university Rennes1 university Rennes1

Institute of Genetics and Development of Rennes - CNRS-UMR6290 - University Rennes1, France



 
 
CANINE GENOMICS & GENETICS PROJECTS



  Bioinformatics Tools

        FEELnc: A pipeline to identify and classify Long non-coding RNAs (LncRNA) [ download here ]

        AUTOGRAPH: A comparative genomcis web server [ here ]


 Genetic disease projects: [ here ]


  Genome Annotation and Analysis
    new ! LncRNA project: Characterisation and functional predictions of canine long non-coding RNAs [Le Beguec et al.]
    Scientific Reports 2018
    [Full Text] [PubMed] [LncRNA Project website ]

    An exome sequencing based approach for genome-wide association studies in the dog. [Broeckx et al et al.]
    Scientific Reports 2017
    [Full Text] [PubMed]

    FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome. [Wucher et al.]
    Nucleic Acids Research 2017
    [Full Text] [PubMed]

    Novel origins of copy number variation in the dog genome [Berglund et al.]
    Genome Biology 2012
    [Full Text] [PubMed] [CNV Database]

    Identification of loci governing common and rare phenotypic traits in dog breeds using selection mapping [Vaysse et al.]
    PLos Genetics 2011
    [Full Text] [PubMed] [Metrics] [Supplemental Data]

    Annotation of the domestic dog genome sequence: finding the missing genes [Derrien T. et al.]
    Mam. Genome, 2011
    [PubMed]

    Revisiting the missing protein-coding gene catalog of the domestic dog [Derrien T. et al.]
    BMC Genomics, 2009
    [Full Text] [PubMed]

    Assessment and impact of intra-breed stratification on SNP-based association studies [Quignon P. et al.]
    PLos ONE 2007
    [Full Text] [PubMed] [Metrics]


  Canine olfactory receptors project

    Genetic diversity of canine olfactory receptors [Robin S. et al.] BMC Genomics, 2009
    [Full Text]

    The dog and rat olfactory receptor repertoires [Quignon P. et al.] Genome Biol., 2005
    [Read more...]

    Olfactory receptor sequence polymorphism within and between breeds of dogs [Tacher S. et al.] J. Hered., 2005
    [Read more...]

    Comparison of the canine and human olfactory receptor gene repertoire [Quignon P. et al.] Genome Biol., 2003
    [Full Text]


  Development of bioinformatic tools
    FEELnc: a bioinformatics tool to identify and classify Long non-coding RNAs [Wucher et al.] Nucleic Acids Research 2017
    [Download, Installation and Requirements from github]


    AutoGRAPH: a web server for automating and visualizing comparative genome maps [Derrien T. et al.] Bioinformatics 2007
    [AUTOGRAPH Web server]


    CRH_Server: Comparative and Radiation Hybrid Server for the Canine Genome [Hitte C. et al.] Bioinformatics 2004
    [Web server]


    DogDB: Canine Genome Maps Database
    [enter here]



  Dog genomic resources
    Dog 10K genomes project [Enter]
    Project Consortium: [here]

    Dog Genome Sequencing Project [Lindblad-Toh K. et al.]; Nature, 2005
    [Enter]

    A 10,000 Canine Gene RH Map [Hitte C. et al.] ; Nat. Rev. Genet., 2005
    [Enter]

    An integrated FISH-RH Map  [Breen M.*, Hitte C.*, Lorentzen T.* et al.]; BMC Genomics, 2004
    [Enter]

    A 1-Mb Resolution RH map of the canine genome [Guyon R. et al. ]; Proc. Natl. Acad. Sci. USA, 2003
    [Enter]


Questions or comments : contact
hitte[@]univ-rennes1.fr


 

Last updated : September, 2018  
©  Copyright 2005-2018 UMR6290 CNRS  

We thank Genouest, the bioinformatic plateform and the bioinformatic genouest's team for hosting the web site