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university Rennes1 university Rennes1

Institute of Genetics and Development of Rennes - CNRS-UMR6290 - University Rennes1, France



 
 
CANINE GENOMICS & GENETICS PROJECTS



     Bioinformatics tools :

        FEELnc: A pipeline to identify and classify Long non-coding RNAs (LncRNA) [ download here ]

        AUTOGRAPH: A comparative genomcis web server [ here]

     Genome Annotation

     Genetic diseases: [ here ]

     Canine olfactory receptors project


  Genome Annotation
    Novel origins of copy number variation in the dog genome [Berglund et al.] Genome Biology 2012
    [Full Text] [PubMed] [CNV Database]
    Identification of loci governing common and rare phenotypic traits in dog breeds using selection mapping [Vaysse et al.] PLos Genetics 2011
    [Full Text] [PubMed] [Metrics] [Supplemental Data]

    Annotation of the domestic dog genome sequence: finding the missing genes [Derrien T. et al.] Mam. Genome, 2011
    [PubMed]
    Revisiting the missing protein-coding gene catalog of the domestic dog [Derrien T. et al.] BMC Genomics, 2009
    [Full Text] [PubMed]
    Assessment and impact of intra-breed stratification on SNP-based association studies [Quignon P. et al.] PLos ONE 2007
    [Full Text] [PubMed] [Metrics]

  Canine olfactory receptors project
    Olfactory receptors, to which odorant molecules specifically bind, are encoded by the largest gene family yet identified in the mammalian genome. We investigate polymorphisms due to the possible existence of multiple alleles dispersed in different dog breeds by carrying out a survey of the sequences of the olfactory receptor genes.

    Genetic diversity of canine olfactory receptors [Robin S. et al.] BMC Genomics, 2009
    [Full Text]
    The dog and rat olfactory receptor repertoires [Quignon P. et al.] Genome Biol., 2005
    [Read more...]
    Olfactory receptor sequence polymorphism within and between breeds of dogs [Tacher S. et al.] J. Hered., 2005
    [Read more...]
    Comparison of the canine and human olfactory receptor gene repertoire [Quignon P. et al.] Genome Biol., 2003
    [Full Text]

  Development of bioinformatic tools
    FEELnc [FlExible Extraction of Long non-coding RNAs] : a bioinformatics tool to identify and classify Long non-coding RNAs
    [ Download, Installation and Requirements here from github ]

    AutoGRAPH : a web server for automating and visualizing comparative genome maps [Derrien T. et al.] Bioinformatics 2007
    [AUTOGRAPH Web server]

    CRH_Server : Comparative and Radiation Hybrid Server for the Canine Genome [Hitte C. et al.] Bioinformatics 2004
    [Web server]

    DogDB : Canine Genome Maps Database
    [enter here]


  Dog genomic resources
    Dog Genome Sequencing Project [Lindblad-Toh K. et al.]; Nature, 2005
    [Enter]
    A 10,000 Canine Gene RH Map [Hitte C. et al.] ; Nat. Rev. Genet., 2005
    [Enter]
    An integrated FISH-RH Map  [Breen M.*, Hitte C.*, Lorentzen T.* et al.]; BMC Genomics, 2004
    [Enter]
    A 1-Mb Resolution RH map of the canine genome [Guyon R. et al. ]; Proc. Natl. Acad. Sci. USA, 2003
    [Enter]


Questions or comments : contact
hitte[@]univ-rennes1.fr


 

Last updated : Nov, 2015  
©  Copyright 2005-2015 UMR6290 CNRS  

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