nature-review recommended genetics websites  dog genetics

university Rennes1 university Rennes1

Institute of Genetics and Development of Rennes - CNRS-UMR6290 - University Rennes1, France


     Bioinformatics tools:

        FEELnc: A pipeline to identify and classify Long non-coding RNAs (LncRNA) [ download here ]

        AUTOGRAPH: A comparative genomcis web server [ here ]

     Genome Annotation

     Genetic disease projects: [ here ]

     Canine olfactory receptors project

  Genome Annotation
    Novel origins of copy number variation in the dog genome [Berglund et al.] Genome Biology 2012
    [Full Text] [PubMed] [CNV Database]

    Identification of loci governing common and rare phenotypic traits in dog breeds using selection mapping [Vaysse et al.] PLos Genetics 2011
    [Full Text] [PubMed] [Metrics] [Supplemental Data]

    Annotation of the domestic dog genome sequence: finding the missing genes [Derrien T. et al.] Mam. Genome, 2011

    Revisiting the missing protein-coding gene catalog of the domestic dog [Derrien T. et al.] BMC Genomics, 2009
    [Full Text] [PubMed]

    Assessment and impact of intra-breed stratification on SNP-based association studies [Quignon P. et al.] PLos ONE 2007
    [Full Text] [PubMed] [Metrics]

  Canine olfactory receptors project

    Genetic diversity of canine olfactory receptors [Robin S. et al.] BMC Genomics, 2009
    [Full Text]

    The dog and rat olfactory receptor repertoires [Quignon P. et al.] Genome Biol., 2005
    [Read more...]

    Olfactory receptor sequence polymorphism within and between breeds of dogs [Tacher S. et al.] J. Hered., 2005
    [Read more...]

    Comparison of the canine and human olfactory receptor gene repertoire [Quignon P. et al.] Genome Biol., 2003
    [Full Text]

  Development of bioinformatic tools
    FEELnc [FlExible Extraction of Long non-coding RNAs] : a bioinformatics tool to identify and classify Long non-coding RNAs
    [Download, Installation and Requirements from github]

    AutoGRAPH : a web server for automating and visualizing comparative genome maps [Derrien T. et al.] Bioinformatics 2007
    [AUTOGRAPH Web server]

    CRH_Server : Comparative and Radiation Hybrid Server for the Canine Genome [Hitte C. et al.] Bioinformatics 2004
    [Web server]

    DogDB : Canine Genome Maps Database
    [enter here]

  Dog genomic resources
    Dog Genome Sequencing Project [Lindblad-Toh K. et al.]; Nature, 2005

    A 10,000 Canine Gene RH Map [Hitte C. et al.] ; Nat. Rev. Genet., 2005

    An integrated FISH-RH Map  [Breen M.*, Hitte C.*, Lorentzen T.* et al.]; BMC Genomics, 2004

    A 1-Mb Resolution RH map of the canine genome [Guyon R. et al. ]; Proc. Natl. Acad. Sci. USA, 2003

Questions or comments : contact


Last updated : Sept, 2016  
©  Copyright 2005-2016 UMR6290 CNRS  

We thank Genouest, the bioinformatic plateform and the bioinformatic genouest's team for hosting the web site