The RH10K map featuresback
The RH10K map features
Markers characteristics are listed below : (1)- chr_number (2)- Size in Mb (estimated by cytology measure) (3)- Size in Mb (estimated by the 7.8x sequence assembly Release 1.0) (4)- Size in cR (RH map unit) (5)- number of marker (6)- number of unique position (7)- inter-marker distance (calculated from cytology values) (8)- inter-marker distance (calculated from the 7.8x sequence assembly Release 1.0 values) (9)- chr_number (10)- number of markers with high statistical support (11)- number of markers with FISH and RH5000 data (12)- number of markers used in the integration (13)- number of Framework markers (14)- number of Framework markers with high statistical support (15)- chr_number (16)- number of HSA segment (17)- number of HSA comparative singletons (18)- number of HSA comparative singletons also identified in the 7.8x assembly (19)- number of marker sequences aligned with the 7.8x assembly (20)- number of marker sequences in agreement with the 7.8x assembly (21)- % of marker sequences in agreement with the 7.8x assembly (22)- number of marker sequences in disagreement with the 7.8x assembly (23)- % of marker sequences in disagreement with the 7.8x assembly
(1) (2) (3) (4) (5) (6) (7) (8) (9) (10) (11) (12) (13) (14) (15) (16) (17) (18) (19) (20) (21) (22) (23) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CFA01 137 124,9 5385 637 459 298 272 CFA01 414 31 25 321 305 CFA01 4 10 10 546 546 100,0% 0 0,0% CFA02 99 87,7 4335 458 350 283 251 CFA02 306 20 15 202 202 CFA02 4 6 5 413 410 99,3% 3 0,7% CFA03 105 95,1 3934 322 280 375 340 CFA03 224 15 8 211 122 CFA03 4 10 7 271 267 98,5% 4 1,5% CFA04 100 91,3 3837 395 330 303 277 CFA04 304 20 15 230 227 CFA04 3 7 5 345 343 99,4% 2 0,6% CFA05 99 92,1 4879 426 376 263 245 CFA05 366 21 14 254 247 CFA05 5 6 4 368 366 99,5% 2 0,5% CFA06 87 79,1 3898 398 342 254 231 CFA06 305 16 9 207 206 CFA06 4 3 3 352 351 99,7% 1 0,3% CFA07 94 83,0 4076 383 340 276 244 CFA07 308 19 13 242 242 CFA07 3 5 2 351 347 98,9% 4 1,1% CFA08 86 77,4 3723 282 263 327 294 CFA08 214 17 13 226 215 CFA08 3 2 1 241 238 98,8% 3 1,2% CFA09 77 53,6 6041 440 399 193 134 CFA09 359 16 12 341 195 CFA09 4 2 0 386 386 100,0% 0 0,0% CFA10 80 72,7 4383 310 295 271 246 CFA10 263 13 10 226 169 CFA10 4 4 3 274 271 98,9% 3 1,1% CFA11 86 75,8 2760 316 285 302 266 CFA11 261 18 14 194 185 CFA11 4 4 4 269 267 99,3% 2 0,7% CFA12 85 75,5 3786 265 258 329 292 CFA12 215 21 13 230 228 CFA12 2 5 4 218 217 99,5% 1 0,5% CFA13 75 66,2 2905 216 207 362 320 CFA13 199 13 10 150 147 CFA13 4 4 4 183 182 99,5% 1 0,5% CFA14 72 63,5 2041 273 227 317 280 CFA14 215 20 12 193 191 CFA14 6 5 4 235 229 97,4% 6 2,6% CFA15 75 67,2 3342 291 260 288 259 CFA15 247 13 8 196 193 CFA15 6 1 1 260 257 98,8% 3 1,2% CFA16 73 60,3 2470 237 212 344 284 CFA16 209 8 4 172 169 CFA16 4 3 2 196 194 99,0% 2 1,0% CFA17 80 66,9 3540 303 275 291 243 CFA17 264 13 8 210 207 CFA17 3 1 1 278 277 99,6% 1 0,4% CFA18 66 66,2 3292 302 288 229 230 CFA18 235 14 12 242 216 CFA18 3 3 3 259 255 98,5% 4 1,5% CFA19 66 56,9 1429 83 81 815 703 CFA19 79 10 5 64 64 CFA19 3 2 1 57 54 94,7% 3 5,3% CFA20 66 61,2 2560 412 299 221 205 CFA20 255 11 7 197 193 CFA20 3 5 3 359 357 99,4% 2 0,6% CFA21 61 53,0 3121 229 214 285 248 CFA21 202 14 11 163 161 CFA21 1 4 4 186 186 100,0% 0 0,0% CFA22 61 64,2 1649 157 139 439 462 CFA22 136 9 8 115 115 CFA22 1 4 3 141 140 99,3% 1 0,7% CFA23 61 55,6 1879 202 176 347 316 CFA23 153 8 5 128 117 CFA23 3 1 1 166 165 99,4% 1 0,6% CFA24 73 50,7 3345 236 229 319 222 CFA24 176 12 9 195 191 CFA24 1 3 3 196 196 100,0% 0 0,0% CFA25 60 54,4 2812 240 214 280 254 CFA25 178 11 5 155 151 CFA25 4 3 3 202 201 99,5% 1 0,5% CFA26 48 41,0 2784 229 214 224 192 CFA26 185 12 8 186 183 CFA26 3 4 3 193 192 99,5% 1 0,5% CFA27 57 49,1 2376 254 235 243 209 CFA27 230 9 7 197 197 CFA27 2 4 3 228 227 99,6% 1 0,4% CFA28 55 42,5 2848 258 248 222 171 CFA28 233 15 12 204 192 CFA28 1 5 3 213 211 99,1% 2 0,9% CFA29 51 44,9 2111 135 129 395 348 CFA29 121 12 10 120 113 CFA29 2 2 2 108 108 100,0% 0 0,0% CFA30 47 43,2 2542 265 239 197 181 CFA30 209 8 7 189 189 CFA30 1 4 2 227 225 99,1% 2 0,9% CFA31 50 41,2 1387 98 88 568 468 CFA31 88 6 5 80 79 CFA31 2 4 4 75 75 100,0% 0 0,0% CFA32 51 41,8 1855 130 122 418 343 CFA32 118 10 7 101 99 CFA32 2 4 4 112 111 99,1% 1 0,9% CFA33 41 34,5 1261 152 140 293 246 CFA33 134 11 10 113 109 CFA33 1 5 3 131 129 98,5% 2 1,5% CFA34 50 45,2 1283 147 119 420 380 CFA34 109 12 8 94 92 CFA34 2 0 0 122 122 100,0% 0 0,0% CFA35 38 29,5 1601 115 107 355 276 CFA35 102 8 7 90 90 CFA35 1 1 1 92 91 98,9% 1 1,1% CFA36 41 34,0 1862 119 115 357 295 CFA36 103 10 8 106 99 CFA36 2 2 1 93 92 98,9% 1 1,1% CFA37 40 33,9 2215 143 138 290 246 CFA37 114 12 10 109 109 CFA37 2 2 2 109 109 100,0% 0 0,0% CFA38 38 26,5 1193 109 94 404 282 CFA38 65 6 5 76 71 CFA38 1 0 0 100 99 99,0% 1 1,0% CFA39 139 126,9 2735 381 295 471 430 CFA39 254 11 4 131 130 CFA39 1 2 1 334 333 99,7% 1 0,3% TOTAL 2770 2428,7 113475 10348 9081 305 267 8152 525 373 6860 6410 109 142 110 8889 8826 99,3% 63 0,7% % 100% 87,8% % 89,8% 5,1% 4,1% 75,5% 93,4% 8826 99,3% 63 0,7% 31 conserved segment segments 109 singletons 142 TOTAL 251